Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
AMM31678.1Hypothetical protein. (99 aa)    
Predicted Functional Partners:
AMM30707.1
DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.962
AMM31458.1
Pfam:pfam13177 DNA polymerase III, delta subunit.
   
 0.960
AMM32498.1
Pfam:pfam07733 Bacterial DNA polymerase III alpha subunit.
   
 0.953
AMM32776.1
Pfam:pfam06144 DNA polymerase III, delta subunit.
    
 0.938
AMM33168.1
Exonuclease; Pfam:pfam00929 Exonuclease.
 
  
0.924
AMM33342.1
DNA polymerase III subunit epsilon; Pfam:pfam00929 Exonuclease.
     
  0.900
AMM33340.1
Pfam:pfam00580 UvrD/REP helicase N-terminal domain; Belongs to the helicase family. UvrD subfamily.
 
  
 0.641
deaD
ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
 
 0.577
rpmD
Pfam:pfam00327 Ribosomal protein L30p/L7e.
   
 0.576
dnaE2
DNA polymerase III subunit alpha; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
   
 
 0.550
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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