Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMM31926.1Hypothetical protein; Pfam:pfam03466 LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
AMM33529.1
Pfam:pfam00126 Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.771
AMM31927.1
Pfam:pfam04303 PrpF protein.
  
  
 0.552
AMM32601.1
Glutamate synthase; Pfam:pfam01645 Conserved region in glutamate synthase.
     
 0.526
AMM32730.1
Putative transcriptional regulator, LysR family; Pfam:pfam03466 LysR substrate binding domain.
  
     0.502
AMM31925.1
Hypothetical protein.
       0.473
AMM33975.1
Transcriptional regulator, Crp/Fnr family; Pfam:pfam00027 Cyclic nucleotide-binding domain.
  
 
 0.461
AMM31928.1
Major facilitator superfamily MFS; Pfam:pfam00083 Sugar (and other) transporter.
  
    0.411
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.407
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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