STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM31986.1Pfam:pfam00701 Dihydrodipicolinate synthetase family; Belongs to the DapA family. (314 aa)    
Predicted Functional Partners:
AMM31903.1
Pfam:pfam00701 Dihydrodipicolinate synthetase family; Belongs to the DapA family.
  
  
  0.961
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
 
 0.942
AMM33741.1
Pfam:pfam02774 Semialdehyde dehydrogenase, dimerization domain; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
 
 0.931
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
  
 
0.924
AMM30867.1
Pfam:pfam00742 Homoserine dehydrogenase.
  
 
 0.912
AMM33217.1
Pfam:pfam00742 Homoserine dehydrogenase.
  
 
 0.912
AMM31985.1
LacI family transcriptional regulator; Pfam:pfam13377 Periplasmic binding protein-like domain.
 
     0.609
AMM33311.1
Pfam:pfam01817 Chorismate mutase type II.
  
  
 0.568
gatC
glutamyl-tRNA amidotransferase; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
  
 0.557
AMM34346.1
Pfam:pfam07470 Glycosyl Hydrolase Family 88.
 
    0.534
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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