STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM32011.1Kelch repeat-containing protein. (531 aa)    
Predicted Functional Partners:
AMM34315.1
mRNA 3'-end processing factor; Pfam:pfam10996 Beta-Casp domain.
    
 0.967
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.962
AMM33937.1
Pfam:pfam00850 Histone deacetylase domain.
    
 0.905
AMM31367.1
Pfam:pfam05199 GMC oxidoreductase.
  
 
 0.888
AMM34120.1
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
  
 
 0.883
AMM32419.1
Tat (Twin-arginine translocation) pathway signal sequence domain protein.
  
 0.879
AMM32558.1
Signal transduction histidine kinase LytS.
  
 0.879
AMM31185.1
Hypothetical protein.
   
 0.878
AMM32018.1
DNA/RNA helicase; Pfam:pfam00176 SNF2 family N-terminal domain.
   
 0.878
AMM31612.1
Hypothetical protein; Pfam:pfam12796 Ankyrin repeats (3 copies).
  
 0.859
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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