STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM32012.1Hypothetical protein. (125 aa)    
Predicted Functional Partners:
AMM32013.1
Peptidase C1; Pfam:pfam00112 Papain family cysteine protease.
       0.727
AMM32014.1
Hypothetical protein.
       0.727
AMM32011.1
Kelch repeat-containing protein.
   
 
0.574
AMM31531.1
Hypothetical protein; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA).
   
 0.503
AMM31697.1
AAA ATPase, central domain protein; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA).
   
 0.503
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
 0.491
AMM30862.1
Thiol:disulfide interchange protein; Pfam:pfam02683 Cytochrome C biogenesis protein transmembrane region.
    
 0.486
AMM34201.1
NHL repeat-containing protein; Pfam:pfam13905 Thioredoxin-like.
    
 0.486
AMM30734.1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.473
AMM32835.1
Pfam:pfam00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD.
   
 
 0.473
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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