STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM32254.1Acid phosphatase; Pfam:pfam01569 PAP2 superfamily. (247 aa)    
Predicted Functional Partners:
AMM32253.1
Alkaline phosphatase; Pfam:pfam09335 SNARE associated Golgi protein.
     
 0.804
AMM32251.1
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  
 0.717
AMM32252.1
Putative transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.
  
  
 0.646
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
  0.566
AMM31446.1
Pfam:pfam00067 Cytochrome P450.
   
 0.555
AMM34514.1
Pfam:pfam00067 Cytochrome P450.
   
 0.555
AMM34310.1
Indigoidine synthase; Pfam:pfam00501 AMP-binding enzyme.
   
 0.518
AMM32255.1
XRE family transcriptional regulator; Pfam:pfam01381 Helix-turn-helix.
       0.514
AMM34626.1
Putative fatty-acid--CoA ligase; Pfam:pfam00501 AMP-binding enzyme.
   
 0.478
AMM34200.1
Hypothetical protein; Pfam:pfam13338 Domain of unknown function (DUF4095).
 
     0.457
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.