STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM32339.1Pfam:pfam05193 Peptidase M16 inactive domain; Belongs to the peptidase M16 family. (456 aa)    
Predicted Functional Partners:
AMM32747.1
Ubiquinol-cytochrome C reductase; Pfam:pfam00355 Rieske [2Fe-2S] domain.
   
 0.993
AMM32262.1
Hypothetical protein; Pfam:pfam01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit.
   
 
 0.966
AMM32748.1
Hypothetical protein; Pfam:pfam13631 Cytochrome b(N-terminal)/b6/petB.
    
 0.923
AMM34527.1
Pfam:pfam13631 Cytochrome b(N-terminal)/b6/petB.
    
 0.923
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.904
AMM32751.1
Cytochrome C oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
   
 
 0.894
AMM32745.1
Pfam:pfam00510 Cytochrome c oxidase subunit III.
   
 
 0.893
AMM32752.1
Pfam:pfam00116 Cytochrome C oxidase subunit II, periplasmic domain.
   
 
 0.893
AMM30817.1
Cholesterol dehydrogenase; Pfam:pfam05368 NmrA-like family.
   
 
 0.860
AMM34100.1
Putative nucleoside-diphosphate-sugar epimerase; Pfam:pfam05368 NmrA-like family.
   
 
 0.860
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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