STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM32382.1Hypothetical protein. (145 aa)    
Predicted Functional Partners:
AMM32062.1
Pfam:pfam01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit.
  
     0.775
AMM32063.1
Pfam:pfam01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit.
  
     0.775
AMM32577.1
Pfam:pfam03969 AFG1-like ATPase.
  
     0.775
AMM32351.1
Hypothetical protein.
  
     0.774
AMM32813.1
Hypothetical protein.
  
     0.774
AMM32060.1
Succinate dehydrogenase; Pfam:pfam13085 2Fe-2S iron-sulfur cluster binding domain.
  
     0.741
AMM32061.1
Succinate dehydrogenase flavoprotein subunit; Pfam:pfam00890 FAD binding domain.
  
     0.726
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.633
crgA
Septation inhibitor protein; Involved in cell division; Belongs to the CrgA family.
  
     0.547
rpmI
Pfam:pfam01632 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
       0.524
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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