Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMM32476.1Pfam:pfam11239 Protein of unknown function (DUF3040). (119 aa)    
Predicted Functional Partners:
AMM32708.1
Pfam:pfam03136 Pup-ligase protein.
  
   
 0.628
clpS
ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
  
     0.604
AMM33047.1
Pfam:pfam11343 Protein of unknown function (DUF3145).
  
     0.599
AMM32526.1
Hypothetical protein.
  
     0.578
AMM32314.1
Acetyltransferase; Pfam:pfam13312 Domain of unknown function (DUF4081).
  
     0.576
AMM33180.1
Pfam:pfam04851 Type III restriction enzyme, res subunit.
  
     0.548
AMM32460.1
Pfam:pfam13411 MerR HTH family regulatory protein.
  
     0.541
pafA
Pup--protein ligase; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine.
  
   
 0.525
rbpA
RNA polymerase-binding protein RbpA; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.518
AMM32541.1
dUTPase; Pfam:pfam13834 Domain of unknown function (DUF4193).
  
     0.508
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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