STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM32530.1Pfam:pfam01654 Bacterial Cytochrome Ubiquinol Oxidase. (543 aa)    
Predicted Functional Partners:
AMM32531.1
Pfam:pfam02322 Cytochrome oxidase subunit II.
 
 0.999
AMM32532.1
Pfam:pfam00005 ABC transporter.
  
 0.998
AMM32061.1
Succinate dehydrogenase flavoprotein subunit; Pfam:pfam00890 FAD binding domain.
     
 0.738
AMM32529.1
Transcriptional regulator; Pfam:pfam03965 Penicillinase repressor.
 
   
 0.709
AMM32528.1
Zn-dependent protease with chaperone function; Pfam:pfam01435 Peptidase family M48.
 
     0.674
AMM32060.1
Succinate dehydrogenase; Pfam:pfam13085 2Fe-2S iron-sulfur cluster binding domain.
    
 0.660
AMM32063.1
Pfam:pfam01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit.
     
 0.571
AMM32062.1
Pfam:pfam01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit.
     
 0.544
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
  
 0.528
AMM32748.1
Hypothetical protein; Pfam:pfam13631 Cytochrome b(N-terminal)/b6/petB.
     
 0.512
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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