STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM32645.1Pfam:pfam02628 Cytochrome oxidase assembly protein. (309 aa)    
Predicted Functional Partners:
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 0.997
AMM32646.1
Pfam:pfam12698 ABC-2 family transporter protein.
   
 0.961
AMM32666.1
Hypothetical protein; Pfam:pfam02104 SURF1 family.
 
 
 0.843
AMM32647.1
ABC-type multidrug transport system ATPase component; Pfam:pfam00005 ABC transporter.
     
 0.824
AMM33456.1
Membrane protein; Pfam:pfam02104 SURF1 family.
 
 
 0.785
AMM32745.1
Pfam:pfam00510 Cytochrome c oxidase subunit III.
 
  
 0.741
AMM32748.1
Hypothetical protein; Pfam:pfam13631 Cytochrome b(N-terminal)/b6/petB.
 
   
 0.731
AMM32746.1
Cystathionine beta-lyase; Pfam:pfam00034 Cytochrome c.
 
  
 0.717
AMM32752.1
Pfam:pfam00116 Cytochrome C oxidase subunit II, periplasmic domain.
 
  
 0.693
AMM32751.1
Cytochrome C oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
  
 0.687
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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