Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMM32663.1Pfam:pfam03916 Polysulphide reductase, NrfD. (312 aa)    
Predicted Functional Partners:
AMM32662.1
Pfam:pfam13247 4Fe-4S dicluster domain.
 
  
 0.959
AMM32661.1
Formate dehydrogenase; Pfam:pfam01568 Molydopterin dinucleotide binding domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.950
AMM32199.1
Ferredoxin; Pfam:pfam13247 4Fe-4S dicluster domain.
 
  
 0.830
AMM32197.1
Dehydrogenase; Pfam:pfam04879 Molybdopterin oxidoreductase Fe4S4 domain.
 
  
 0.813
AMM32198.1
Formate dehydrogenase subunit alpha; Pfam:pfam01568 Molydopterin dinucleotide binding domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.790
AMM32203.1
Pfam:pfam00009 Elongation factor Tu GTP binding domain.
 
   
 0.732
AMM32664.1
ABC transporter ATP-binding protein YdiF; Pfam:pfam00005 ABC transporter.
       0.631
AMM32660.1
ATP-dependent DNA helicase RecQ; Pfam:pfam00270 DEAD/DEAH box helicase.
     
 0.516
selA
Hypothetical protein; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
   
 0.475
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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