STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM32665.1prolyl-tRNA synthetase; Pfam:pfam04073 Aminoacyl-tRNA editing domain. (164 aa)    
Predicted Functional Partners:
AMM32848.1
Pfam:pfam01432 Peptidase family M3.
 
      0.894
AMM32666.1
Hypothetical protein; Pfam:pfam02104 SURF1 family.
       0.774
AMM32667.1
Hypothetical protein.
       0.774
AMM32668.1
Pfam:pfam11298 Protein of unknown function (DUF3099).
       0.773
AMM32669.1
3-oxoacyl-(Acyl-carrier-protein) reductase; Pfam:pfam00106 short chain dehydrogenase.
       0.539
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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