STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM32793.1Pfam:pfam03772 Competence protein. (609 aa)    
Predicted Functional Partners:
AMM32794.1
Putative DNA-binding protein; Pfam:pfam12836 Helix-hairpin-helix motif.
 
  
 0.898
AMM33049.1
Pfam:pfam02481 DNA recombination-mediator protein A.
 
  
 0.794
AMM33305.1
Phosphoribosyltransferase; Pfam:pfam00156 Phosphoribosyl transferase domain.
 
  
 0.759
AMM33050.1
Mg chelatase-like protein; Pfam:pfam01078 Magnesium chelatase, subunit ChlI.
 
  
 0.684
AMM32776.1
Pfam:pfam06144 DNA polymerase III, delta subunit.
    
 0.660
leuS
Pfam:pfam13603 Leucyl-tRNA synthetase, Domain 2; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.650
AMM32795.1
DegV family protein; Pfam:pfam02645 Uncharacterized protein, DegV family COG1307.
       0.634
AMM32109.1
Type IV leader peptidase; Belongs to the peptidase A24 family.
  
  
 0.622
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
   
 0.509
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.472
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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