STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM32831.1ATPase AAA; Pfam:pfam12002 MgsA AAA+ ATPase C terminal. (478 aa)    
Predicted Functional Partners:
AMM31281.1
O-acetyl-ADP-ribose deacetylase; Pfam:pfam01661 Macro domain.
      0.907
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
     
 0.674
AMM33336.1
ATP-dependent DNA helicase; Pfam:pfam00580 UvrD/REP helicase N-terminal domain.
  
 
 0.661
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
  
 0.608
AMM32660.1
ATP-dependent DNA helicase RecQ; Pfam:pfam00270 DEAD/DEAH box helicase.
 
 
 0.572
dinB
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
 
 
 0.550
AMM32357.1
Cell division FtsK/SpoIIIE; Pfam:pfam01580 FtsK/SpoIIIE family; Belongs to the FtsK/SpoIIIE/SftA family.
  
 0.522
AMM31962.1
DNA polymerase IV; Pfam:pfam00817 impB/mucB/samB family.
 
 
 0.508
AMM32829.1
Hypothetical protein.
       0.506
AMM33810.1
Uroporphyrinogen-III C-methyltransferase; Pfam:pfam00590 Tetrapyrrole (Corrin/Porphyrin) Methylases.
  
    0.492
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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