Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMM32947.1Pfam:pfam00016 Ribulose bisphosphate carboxylase large chain, catalytic domain; Belongs to the RuBisCO large chain family. (421 aa)    
Predicted Functional Partners:
AMM32948.1
Type III effector Hrp-dependent protein; Pfam:pfam07005 Protein of unknown function, DUF1537.
 
   
 0.955
AMM32043.1
Siderophore binding protein.
   
 
 0.839
AMM32949.1
L-threonine 3-dehydrogenase; Pfam:pfam08240 Alcohol dehydrogenase GroES-like domain.
       0.621
pgk
Pfam:pfam00162 Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.571
AMM31654.1
Dihydrodipicolinate synthetase family.
  
     0.559
AMM31697.1
AAA ATPase, central domain protein; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA).
 
  
 0.545
AMM31189.1
O-acetylhomoserine aminocarboxypropyltransferase; Pfam:pfam01053 Cys/Met metabolizm PLP-dependent enzyme.
   
  
 0.542
AMM32257.1
O-acetylhomoserine (Thiol)-lyase; Pfam:pfam01053 Cys/Met metabolizm PLP-dependent enzyme.
   
  
 0.542
AMM33780.1
Thioredoxin; Pfam:pfam00085 Thioredoxin; Belongs to the thioredoxin family.
  
 
 
 0.489
AMM32001.1
Pfam:pfam02219 Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
   
    0.488
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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