STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM33094.1Transcriptional regulator, IclR family; Pfam:pfam01614 Bacterial transcriptional regulator. (239 aa)    
Predicted Functional Partners:
AMM31810.1
ArsR family transcriptional regulator; Pfam:pfam09339 IclR helix-turn-helix domain.
  
     0.721
AMM31946.1
Hypothetical protein; Pfam:pfam09339 IclR helix-turn-helix domain.
  
     0.690
AMM34155.1
Urea amidolyase; Pfam:pfam02626 Allophanate hydrolase subunit 2.
  
    0.687
AMM33040.1
Pfam:pfam11253 Protein of unknown function (DUF3052).
  
     0.686
AMM33095.1
Pyridoxamine 5-phosphate oxidase; Pfam:pfam08002 Protein of unknown function (DUF1697).
       0.664
leuC
3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
  
 0.663
AMM31866.1
Pfam:pfam01614 Bacterial transcriptional regulator.
  
     0.650
AMM34403.1
Putative IclR-type regulator; Pfam:pfam01614 Bacterial transcriptional regulator.
  
     0.627
leuD
Isopropylmalate isomerase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
  
    0.618
AMM34530.1
Transcriptional regulator, IclR family; Pfam:pfam01614 Bacterial transcriptional regulator.
  
     0.615
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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