Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
AMM33269.1Pfam:pfam00482 Type II secretion system (T2SS), protein F. (284 aa)    
Predicted Functional Partners:
AMM33270.1
Pfam:pfam00437 Type II/IV secretion system protein.
  
 0.985
AMM33268.1
Pfam:pfam00482 Type II secretion system (T2SS), protein F.
 
     0.961
AMM33266.1
Pilus assembly protein TadE.
 
  
 0.956
AMM33267.1
Hypothetical protein.
 
     0.924
AMM33265.1
Hypothetical protein.
 
     0.921
AMM33264.1
Hypothetical protein.
 
     0.919
AMM33297.1
SAF domain protein.
 
    0.819
AMM33296.1
Chromosome partitioning protein; Pfam:pfam13614 AAA domain.
 
   
 0.792
AMM33298.1
DNA-binding protein; Pfam:pfam12728 Helix-turn-helix domain.
  
     0.772
AMM33299.1
Hypothetical protein.
  
     0.772
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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