STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM33492.1Hypothetical protein; Pfam:pfam05239 PRC-barrel domain. (205 aa)    
Predicted Functional Partners:
AMM33491.1
Photosystem reaction center subunit H; Pfam:pfam09557 Domain of unknown function (DUF2382).
 
  
 
0.685
AMM33494.1
Malto-oligosyltrehalose synthase; Pfam:pfam00128 Alpha amylase, catalytic domain.
  
    0.598
AMM33493.1
1,4-alpha-glucan branching protein; Pfam:pfam00128 Alpha amylase, catalytic domain.
  
    0.590
AMM33495.1
Glycogen operon protein GlgX-like protein; Pfam:pfam02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Belongs to the glycosyl hydrolase 13 family.
  
    0.570
AMM33775.1
Photosystem reaction center subunit H; Pfam:pfam04652 Vta1 like.
  
  
 
0.523
AMM33496.1
RNA polymerase, sigma 28 subunit, FliA/WhiG family; Pfam:pfam04545 Sigma-70, region 4; Belongs to the sigma-70 factor family.
 
    0.518
AMM32221.1
Membrane protein; Pfam:pfam03703 Bacterial PH domain.
  
    0.493
AMM33429.1
Glycine/betaine ABC transporter substrate-binding protein; Pfam:pfam04069 Substrate binding domain of ABC-type glycine betaine transport system.
  
    0.478
AMM34654.1
Glycine/betaine ABC transporter substrate-binding protein; Pfam:pfam04069 Substrate binding domain of ABC-type glycine betaine transport system.
  
    0.478
AMM31634.1
Conjugative transfer gene complex protein; Pfam:pfam12696 TraM recognition site of TraD and TraG.
  
     0.444
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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