STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM33515.1Hypothetical protein; Pfam:pfam08378 Nuclease-related domain. (264 aa)    
Predicted Functional Partners:
leuS
Pfam:pfam13603 Leucyl-tRNA synthetase, Domain 2; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.737
AMM32199.1
Ferredoxin; Pfam:pfam13247 4Fe-4S dicluster domain.
   
    0.624
AMM32662.1
Pfam:pfam13247 4Fe-4S dicluster domain.
   
    0.624
AMM31519.1
Single-stranded DNA-binding protein; Pfam:pfam00436 Single-strand binding protein family.
  
 
 0.611
AMM33022.1
Hypothetical protein; Pfam:pfam00436 Single-strand binding protein family.
  
 
 0.611
AMM34693.1
Single-stranded DNA-binding protein; Pfam:pfam00436 Single-strand binding protein family.
  
 
 0.611
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.556
AMM32601.1
Glutamate synthase; Pfam:pfam01645 Conserved region in glutamate synthase.
  
    0.544
pheT
phenylalanyl-tRNA synthetase subunit beta; Pfam:pfam03483 B3/4 domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.527
AMM33168.1
Exonuclease; Pfam:pfam00929 Exonuclease.
   
 
 0.516
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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