STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM33643.1Pilus assembly protein CpaE. (174 aa)    
Predicted Functional Partners:
AMM33642.1
Pilus assembly protein CpaE; Pfam:pfam13614 AAA domain.
      0.976
AMM33644.1
Flagellar basal body P-ring biosynthesis protein FlgA.
  
  
 0.897
AMM33639.1
Pfam:pfam00482 Type II secretion system (T2SS), protein F.
  
  
 0.891
AMM33640.1
Pfam:pfam00482 Type II secretion system (T2SS), protein F.
  
  
 0.891
AMM33641.1
CpaF pilus assembly protein, ATPase CpaF; Pfam:pfam00437 Type II/IV secretion system protein.
  
  
 0.854
AMM33645.1
Pfam:pfam13400 Putative Flp pilus-assembly TadE/G-like.
  
  
 0.824
AMM33646.1
Pfam:pfam07811 TadE-like protein.
  
  
 0.822
AMM33638.1
Hypothetical protein.
  
    0.808
AMM33647.1
Hypothetical protein; Pfam:pfam04964 Flp/Fap pilin component.
  
  
 0.739
AMM33648.1
Pilus assembly protein; Pfam:pfam04964 Flp/Fap pilin component.
  
  
 0.736
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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