STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM33754.1MFS transporter; Pfam:pfam00916 Sulfate transporter family. (571 aa)    
Predicted Functional Partners:
AMM32112.1
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
 
  
 0.923
AMM33753.1
Transcriptional regulator, ArsR family; Pfam:pfam12840 Helix-turn-helix domain.
 
     0.909
sbcD
Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
   0.692
AMM31612.1
Hypothetical protein; Pfam:pfam12796 Ankyrin repeats (3 copies).
    
 
 0.682
AMM33725.1
Ankyrin repeat-containing protein; Pfam:pfam12796 Ankyrin repeats (3 copies).
    
 
 0.682
AMM31498.1
Rhs family protein; Pfam:pfam05593 RHS Repeat.
    
   0.659
AMM32748.1
Hypothetical protein; Pfam:pfam13631 Cytochrome b(N-terminal)/b6/petB.
    
 
 0.658
AMM34527.1
Pfam:pfam13631 Cytochrome b(N-terminal)/b6/petB.
    
 
 0.658
AMM30788.1
Pfam:pfam13350 Tyrosine phosphatase family.
   
   0.654
AMM33883.1
Pfam:pfam13350 Tyrosine phosphatase family.
   
   0.654
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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