STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM33871.1Pfam:pfam00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. (330 aa)    
Predicted Functional Partners:
AMM34390.1
Pfam:pfam00266 Aminotransferase class-V.
  
 
 0.928
AMM31968.1
Pfam:pfam02913 FAD linked oxidases, C-terminal domain.
   
 0.920
AMM34660.1
Pfam:pfam02913 FAD linked oxidases, C-terminal domain.
   
 0.920
AMM31246.1
Pfam:pfam01274 Malate synthase; Belongs to the malate synthase family.
  
 
 0.916
AMM33996.1
Pfam:pfam01274 Malate synthase; Belongs to the malate synthase family.
  
 
 0.916
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.916
AMM34000.1
Pfam:pfam01261 Xylose isomerase-like TIM barrel; Belongs to the hyi family.
  
 
 0.915
AMM30948.1
Pfam:pfam02595 Glycerate kinase family; Belongs to the glycerate kinase type-1 family.
    
 0.914
AMM34003.1
Pfam:pfam02595 Glycerate kinase family; Belongs to the glycerate kinase type-1 family.
    
 0.914
AMM31247.1
Pfam:pfam00463 Isocitrate lyase family.
     
 0.909
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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