STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM33901.1Endonuclease; Pfam:pfam02720 Domain of unknown function (DUF222). (553 aa)    
Predicted Functional Partners:
AMM31836.1
Iron-sulfur cluster assembly protein HesB; Pfam:pfam00730 HhH-GPD superfamily base excision DNA repair protein.
  
     0.630
menA
1,4-dihydroxy-2-naphthoate prenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
       0.584
AMM33769.1
Hypothetical protein.
  
   
 0.576
AMM32737.1
Hypothetical protein; Pfam:pfam10041 Uncharacterized conserved protein (DUF2277).
  
     0.497
AMM33770.1
DNA-directed DNA polymerase; Pfam:pfam00817 impB/mucB/samB family.
 
    0.488
AMM31046.1
Pfam:pfam04286 Protein of unknown function (DUF445).
 
     0.442
AMM33899.1
AMP-dependent synthetase; Pfam:pfam00501 AMP-binding enzyme.
       0.442
AMM34188.1
Hypothetical protein; Pfam:pfam13338 Domain of unknown function (DUF4095).
 
     0.419
AMM31634.1
Conjugative transfer gene complex protein; Pfam:pfam12696 TraM recognition site of TraD and TraG.
   
 
 0.412
AMM34491.1
Hypothetical protein.
   
 
 0.412
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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