Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMM33948.1Pfam:pfam01022 Bacterial regulatory protein, arsR family. (244 aa)    
Predicted Functional Partners:
AMM33949.1
Methyltransferase family protein; Pfam:pfam05175 Methyltransferase small domain; Belongs to the methyltransferase superfamily.
       0.619
AMM33440.1
ArsR family transcriptional regulator; Pfam:pfam12840 Helix-turn-helix domain.
  
     0.605
AMM32554.1
Hypothetical protein.
  
     0.603
AMM33406.1
Putative major facilitator superfamily transporter; Pfam:pfam05977 Transmembrane secretion effector.
 
     0.571
AMM33945.1
Exopolyphosphatase; Pfam:pfam02541 Ppx/GppA phosphatase family.
 
     0.563
AMM31837.1
Hypothetical protein.
  
    0.517
AMM30878.1
Pfam:pfam02811 PHP domain.
  
     0.513
AMM33952.1
GCN5-related N-acetyltransferase; Pfam:pfam13508 Acetyltransferase (GNAT) domain.
 
     0.495
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
     
 0.488
AMM33944.1
Sugar phosphate isomerase; Pfam:pfam01261 Xylose isomerase-like TIM barrel.
       0.474
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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