Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMM33957.1Pfam:pfam00482 Type II secretion system (T2SS), protein F. (204 aa)    
Predicted Functional Partners:
AMM33958.1
Hypothetical protein.
 
     0.899
AMM33960.1
Hypothetical protein; Pfam:pfam13614 AAA domain.
 
  
 0.895
AMM33959.1
Pfam:pfam00437 Type II/IV secretion system protein.
  
  
 0.761
AMM31767.1
Pfam:pfam11228 Protein of unknown function (DUF3027).
  
     0.733
AMM33452.1
Flagellar basal body P-ring biosynthesis protein FlgA; Pfam:pfam08666 SAF domain.
 
  
 0.683
AMM30710.1
Pfam:pfam05258 Protein of unknown function (DUF721).
  
     0.648
AMM33629.1
Hypothetical protein.
 
  
 0.640
AMM33644.1
Flagellar basal body P-ring biosynthesis protein FlgA.
 
  
 0.634
AMM33642.1
Pilus assembly protein CpaE; Pfam:pfam13614 AAA domain.
 
  
 0.610
AMM32077.1
Pfam:pfam04417 Protein of unknown function (DUF501).
  
     0.607
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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