STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM34004.1Allantoicase; Pfam:pfam13594 Amidohydrolase. (447 aa)    
Predicted Functional Partners:
pyrB
Pfam:pfam02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 0.993
AMM34006.1
Pfam:pfam09349 OHCU decarboxylase.
 
  
 0.988
AMM34003.1
Pfam:pfam02595 Glycerate kinase family; Belongs to the glycerate kinase type-1 family.
 
    0.973
carB
Pfam:pfam02786 Carbamoyl-phosphate synthase L chain, ATP binding domain; Belongs to the CarB family.
 
 
 0.968
carA
Pfam:pfam00988 Carbamoyl-phosphate synthase small chain, CPSase domain; Belongs to the CarA family.
 
  
 0.966
AMM30871.1
Pfam:pfam01177 Asp/Glu/Hydantoin racemase.
   
 0.942
AMM32104.1
Pfam:pfam01177 Asp/Glu/Hydantoin racemase.
   
 0.941
AMM34621.1
Pfam:pfam01177 Asp/Glu/Hydantoin racemase.
    
 0.912
AMM34008.1
Uricase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 
  
 0.899
AMM34007.1
5-hydroxyisourate hydrolase; Pfam:pfam00576 HIUase/Transthyretin family; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.864
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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