STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM34093.1Threonine dehydratase. (98 aa)    
Predicted Functional Partners:
AMM33230.1
Pfam:pfam00005 ABC transporter.
  
 
 0.947
AMM33231.1
ABC transporter substrate-binding protein; Pfam:pfam01297 Periplasmic solute binding protein family.
  
  
 0.848
AMM34092.1
Hypothetical protein.
       0.657
AMM33228.1
Peptide ABC transporter substrate-binding protein; Pfam:pfam01475 Ferric uptake regulator family; Belongs to the Fur family.
  
  
 0.541
AMM32894.1
Hypothetical protein; Pfam:pfam01566 Natural resistance-associated macrophage protein.
  
  
 0.529
AMM33244.1
Manganese transporter; Pfam:pfam01566 Natural resistance-associated macrophage protein.
  
  
 0.529
AMM33570.1
Manganese transporter; Pfam:pfam01566 Natural resistance-associated macrophage protein.
  
  
 0.529
AMM33245.1
DtxR family transcriptional regulator; Pfam:pfam02742 Iron dependent repressor, metal binding and dimerization domain.
  
  
 0.455
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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