Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMM34134.1Hypothetical protein. (722 aa)    
Predicted Functional Partners:
AMM34136.1
Hypothetical protein.
 
     0.870
AMM34135.1
Hypothetical protein.
  
  
 0.788
AMM33985.1
XRE family transcriptional regulator; Pfam:pfam01381 Helix-turn-helix.
  
  
 0.675
AMM31603.1
Hypothetical protein.
  
    0.674
AMM34181.1
Amino acid-binding protein.
  
     0.612
AMM34327.1
Hypothetical protein; Pfam:pfam00082 Subtilase family.
 
 
 0.584
AMM32148.1
Pfam:pfam00196 Bacterial regulatory proteins, luxR family.
  
   
 0.583
AMM32101.1
Thymidylate kinase; Pfam:pfam03190 Protein of unknown function, DUF255.
    
 
 0.582
AMM34060.1
CdaR family transcriptional regulator; Pfam:pfam13556 PucR C-terminal helix-turn-helix domain.
  
     0.576
AMM33291.1
Pfam:pfam01580 FtsK/SpoIIIE family.
 
 
 0.563
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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