STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM34211.1ArsR family transcriptional regulator; Pfam:pfam12840 Helix-turn-helix domain. (111 aa)    
Predicted Functional Partners:
AMM34210.1
ATPase; Pfam:pfam08327 Activator of Hsp90 ATPase-like protein.
 
    0.920
AMM31743.1
ArsR family transcriptional regulator; Pfam:pfam12840 Helix-turn-helix domain.
  
     0.774
AMM30736.1
Polyketide cyclase; Pfam:pfam08327 Activator of Hsp90 ATPase-like protein.
 
    0.696
AMM34057.1
Polyketide cyclase; Pfam:pfam08327 Activator of Hsp90 ATPase-like protein.
 
    0.612
AMM34212.1
Hypothetical protein; Pfam:pfam03807 NADP oxidoreductase coenzyme F420-dependent.
       0.530
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.496
rpmG
Pfam:pfam00471 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.479
rpmB
Pfam:pfam00830 Ribosomal L28 family; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.453
AMM31744.1
Polyketide cyclase; Pfam:pfam08327 Activator of Hsp90 ATPase-like protein.
 
    0.444
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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