STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM34238.1SGNH hydrolase; Pfam:pfam13472 GDSL-like Lipase/Acylhydrolase family. (255 aa)    
Predicted Functional Partners:
AMM32022.1
Pfam:pfam00534 Glycosyl transferases group 1.
      0.900
AMM34239.1
Pfam:pfam01047 MarR family.
       0.773
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.625
AMM34240.1
YCII-related domain protein.
       0.567
AMM32222.1
Cyclase; Pfam:pfam00211 Adenylate and Guanylate cyclase catalytic domain.
  
     0.525
AMM31909.1
Isomalto dextranase.
  
 
 0.448
AMM33961.1
3'-5' exonuclease; Pfam:pfam00476 DNA polymerase family A.
  
    0.448
AMM34202.1
Copper resistance protein CopD; Pfam:pfam09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG).
  
   
 0.444
AMM32563.1
Pfam:pfam02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
 
  
 0.424
AMM31687.1
Hypothetical protein.
  
 
 0.421
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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