STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM34246.1Pfam:pfam02614 Glucuronate isomerase. (491 aa)    
Predicted Functional Partners:
AMM31118.1
Oxidoreductase; Pfam:pfam08125 Mannitol dehydrogenase C-terminal domain.
 
 
 0.981
AMM34243.1
Altronate oxidoreductase; Pfam:pfam08125 Mannitol dehydrogenase C-terminal domain.
 
 
 0.976
AMM31121.1
beta-D-glucuronidase; Pfam:pfam02836 Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.951
AMM31117.1
Pfam:pfam02614 Glucuronate isomerase.
  
  
 
0.905
AMM31960.1
Pfam:pfam01370 NAD dependent epimerase/dehydratase family.
     
  0.800
AMM34247.1
Sugar (Glycoside-Pentoside-Hexuronide) transporter; Pfam:pfam13347 MFS/sugar transport protein.
 
   
 0.800
AMM34244.1
Pfam:pfam04295 D-galactarate dehydratase / Altronate hydrolase, C terminus.
  
 0.781
AMM34245.1
LacI family transcriptional regulator; Pfam:pfam13377 Periplasmic binding protein-like domain.
 
  
 0.634
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.624
AMM34248.1
Pfam:pfam01081 KDPG and KHG aldolase.
     
 0.592
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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