Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMM34252.1Pfam:pfam00195 Chalcone and stilbene synthases, N-terminal domain. (397 aa)    
Predicted Functional Partners:
AMM34251.1
Pfam:pfam01494 FAD binding domain.
 
   
 0.828
AMM31047.1
Zn-dependent hydrolase; Pfam:pfam00581 Rhodanese-like domain.
  
 
   0.751
AMM34315.1
mRNA 3'-end processing factor; Pfam:pfam10996 Beta-Casp domain.
  
 0.724
AMM33594.1
Beta-lactamase; Pfam:pfam00581 Rhodanese-like domain.
    
   0.713
AMM30825.1
Pfam:pfam03441 FAD binding domain of DNA photolyase.
    
 
 0.674
AMM34253.1
ACP synthase; Pfam:pfam09949 Uncharacterized conserved protein (DUF2183).
 
     0.665
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.577
AMM32018.1
DNA/RNA helicase; Pfam:pfam00176 SNF2 family N-terminal domain.
    
 0.555
atpE
ATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
    
 0.518
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.508
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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