Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMM31448.1 | AMM34254.1 | SA2016_0758 | SA2016_3596 | Pfam:pfam01145 SPFH domain / Band 7 family. | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | 0.882 |
| AMM31448.1 | arc | SA2016_0758 | SA2016_2034 | Pfam:pfam01145 SPFH domain / Band 7 family. | ATPase AAA; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.588 |
| AMM32722.1 | AMM34254.1 | SA2016_2050 | SA2016_3596 | Pfam:pfam01145 SPFH domain / Band 7 family. | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | 0.882 |
| AMM32722.1 | arc | SA2016_2050 | SA2016_2034 | Pfam:pfam01145 SPFH domain / Band 7 family. | ATPase AAA; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.588 |
| AMM34254.1 | AMM31448.1 | SA2016_3596 | SA2016_0758 | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | Pfam:pfam01145 SPFH domain / Band 7 family. | 0.882 |
| AMM34254.1 | AMM32722.1 | SA2016_3596 | SA2016_2050 | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | Pfam:pfam01145 SPFH domain / Band 7 family. | 0.882 |
| AMM34254.1 | arc | SA2016_3596 | SA2016_2034 | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | ATPase AAA; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.929 |
| AMM34254.1 | rplB | SA2016_3596 | SA2016_3019 | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.774 |
| AMM34254.1 | rplM | SA2016_3596 | SA2016_2960 | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.773 |
| AMM34254.1 | rplN | SA2016_3596 | SA2016_3011 | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.766 |
| AMM34254.1 | rplQ | SA2016_3596 | SA2016_2987 | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | Pfam:pfam01196 Ribosomal protein L17. | 0.757 |
| AMM34254.1 | rplS | SA2016_3596 | SA2016_2387 | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.758 |
| AMM34254.1 | rpmA | SA2016_3596 | SA2016_2325 | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | Pfam:pfam01016 Ribosomal L27 protein; Belongs to the bacterial ribosomal protein bL27 family. | 0.760 |
| AMM34254.1 | rpsK | SA2016_3596 | SA2016_2989 | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.760 |
| arc | AMM31448.1 | SA2016_2034 | SA2016_0758 | ATPase AAA; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | Pfam:pfam01145 SPFH domain / Band 7 family. | 0.588 |
| arc | AMM32722.1 | SA2016_2034 | SA2016_2050 | ATPase AAA; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | Pfam:pfam01145 SPFH domain / Band 7 family. | 0.588 |
| arc | AMM34254.1 | SA2016_2034 | SA2016_3596 | ATPase AAA; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | 0.929 |
| rplB | AMM34254.1 | SA2016_3019 | SA2016_3596 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | ATPase AAA; Pfam:pfam00004 ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family. | 0.774 |
| rplB | rplM | SA2016_3019 | SA2016_2960 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplB | rplN | SA2016_3019 | SA2016_3011 | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
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