STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM34260.1Hypothetical protein; Pfam:pfam13835 Domain of unknown function (DUF4194). (301 aa)    
Predicted Functional Partners:
AMM34261.1
Pfam:pfam11855 Protein of unknown function (DUF3375).
 
 
   0.994
AMM34259.1
Putative ATP-binding protein; Pfam:pfam13555 P-loop containing region of AAA domain.
 
 
   0.986
AMM31317.1
Hypothetical protein.
   
   0.739
AMM32365.1
Hypothetical protein.
   
   0.739
AMM33985.1
XRE family transcriptional regulator; Pfam:pfam01381 Helix-turn-helix.
  
     0.584
AMM34279.1
Pfam:pfam04306 Protein of unknown function (DUF456).
  
     0.571
AMM34306.1
Transcriptional regulator; Pfam:pfam12728 Helix-turn-helix domain.
  
     0.545
AMM32148.1
Pfam:pfam00196 Bacterial regulatory proteins, luxR family.
  
     0.534
AMM34258.1
Putative transcriptional regulator; Pfam:pfam03816 Cell envelope-related transcriptional attenuator domain.
       0.512
AMM34181.1
Amino acid-binding protein.
  
     0.473
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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