STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM34409.1Protoporphyrinogen oxidase; Pfam:pfam12724 Flavodoxin domain. (183 aa)    
Predicted Functional Partners:
AMM34150.1
Flavodoxin; Pfam:pfam12724 Flavodoxin domain.
  
  
  0.924
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.912
AMM33355.1
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
     
 0.907
AMM31912.1
Protoporphyrinogen oxidase; Pfam:pfam12724 Flavodoxin domain.
  
  
 
0.905
AMM31923.1
Protoporphyrinogen oxidase; Pfam:pfam12724 Flavodoxin domain.
  
  
 
0.905
AMM34410.1
Pfam:pfam07690 Major Facilitator Superfamily.
       0.620
AMM34408.1
Putative CobQ/CobB/MinD/ParA nucleotide binding protein; Pfam:pfam13614 AAA domain.
       0.461
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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