Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMM34440.1Pfam:pfam01042 Endoribonuclease L-PSP. (130 aa)    
Predicted Functional Partners:
AMM34438.1
N-acyl-D-glutamate deacylase; Pfam:pfam13594 Amidohydrolase.
   
 0.929
AMM34439.1
Alanine racemase; Pfam:pfam14031 Putative serine dehydratase domain.
 
   
 0.803
AMM34437.1
Carbohydrate kinase; Pfam:pfam00294 pfkB family carbohydrate kinase.
  
  
 0.661
AMM34441.1
Putative permease; Pfam:pfam00083 Sugar (and other) transporter.
  
    0.658
AMM32093.1
Threonine dehydratase; Pfam:pfam00291 Pyridoxal-phosphate dependent enzyme.
 
 
 0.615
AMM34436.1
Pfam:pfam01081 KDPG and KHG aldolase.
       0.602
AMM34435.1
Hypothetical protein; Pfam:pfam00581 Rhodanese-like domain.
  
    0.588
AMM34442.1
Hypothetical protein; Pfam:pfam08348 YheO-like PAS domain.
 
   
 0.570
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
 
 0.511
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.485
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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