STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM34450.1Rieske (2Fe-2S) domain-containing protein; Pfam:pfam00848 Ring hydroxylating alpha subunit (catalytic domain). (400 aa)    
Predicted Functional Partners:
AMM30802.1
Benzene 1,2-dioxygenase; Pfam:pfam00866 Ring hydroxylating beta subunit.
 
 
 0.935
AMM34120.1
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
    
 0.913
AMM34116.1
Pfam:pfam00171 Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
   
 
 0.903
AMM34241.1
Pfam:pfam04185 Phosphoesterase family.
  
 
  0.831
AMM31721.1
Phospholipase C; Pfam:pfam04185 Phosphoesterase family.
   
 
  0.803
AMM31782.1
Phospholipase; Pfam:pfam04185 Phosphoesterase family.
   
 
  0.803
AMM33862.1
Phospholipase C; Pfam:pfam04185 Phosphoesterase family.
   
 
  0.803
AMM31419.1
Hypothetical protein; Pfam:pfam12588 Phophatidylserine decarboxylase; Belongs to the phosphatidylserine decarboxylase family.
     
  0.800
AMM34449.1
Pfam:pfam01370 NAD dependent epimerase/dehydratase family.
     
 0.596
AMM34447.1
PF06545 family protein; Pfam:pfam06545 Protein of unknown function (DUF1116).
       0.568
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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