STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM34471.1Hypothetical protein; Pfam:pfam00496 Bacterial extracellular solute-binding proteins, family 5 Middle. (529 aa)    
Predicted Functional Partners:
AMM34474.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 0.956
AMM34477.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 
 0.943
AMM34476.1
Peptide ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
  
 0.925
AMM34475.1
Oligopeptide/dipeptide transporter, C-terminal domain protein; Pfam:pfam00005 ABC transporter.
 
  
 0.876
AMM33314.1
Dipeptide/oligopeptide/nickel ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 0.872
AMM33413.1
ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 
 0.853
AMM33414.1
ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 
 0.849
AMM33313.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
 
 0.789
AMM34472.1
Hypothetical protein; Pfam:pfam00753 Metallo-beta-lactamase superfamily.
 
     0.726
AMM34470.1
Hypothetical protein; Pfam:pfam00857 Isochorismatase family.
 
    0.720
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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