STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ28082.12-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway). (286 aa)    
Predicted Functional Partners:
SDQ28023.1
L-fuconate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.871
SDQ28045.1
NADP-dependent aldehyde dehydrogenase.
  
 
 0.816
SDQ28103.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
 0.802
SDQ28066.1
Fumarylacetoacetate (FAA) hydrolase family protein.
     
 0.777
SDQ28004.1
TRAP transporter, DctM subunit.
       0.709
SDQ27962.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.696
SDQ27984.1
TRAP-type C4-dicarboxylate transport system, small permease component.
       0.695
SDQ28124.1
Hypothetical protein.
       0.552
SDQ27941.1
Malate dehydrogenase (NAD) /L-sulfolactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.535
SDQ27924.1
DNA-binding transcriptional regulator, GntR family.
  
    0.403
Your Current Organism:
Arthrobacter crystallopoietes
NCBI taxonomy Id: 37928
Other names: A. crystallopoietes, ATCC 15481, CIP 102717, DSM 20117, IFO 14235, JCM 2522, LMG 3819, LMG:3819, NBRC 14235
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