STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ28808.1L-alanine-DL-glutamate epimerase. (370 aa)    
Predicted Functional Partners:
SDQ28888.1
Predicted acetyltransferase, GNAT superfamily.
     0.715
SDQ28831.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
       0.581
SDQ28850.1
Amino acid ABC transporter membrane protein, PAAT family.
       0.581
SDQ28869.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
       0.581
SDQ28903.1
DNA-binding transcriptional regulator, PucR family.
 
     0.537
SDQ42466.1
DNA-binding transcriptional regulator, IclR family.
     
 0.495
SDQ48045.1
DNA-binding transcriptional regulator, IclR family.
     
 0.495
SDQ49538.1
Transcriptional regulator, IclR family.
     
 0.495
SDQ53178.1
DNA-binding transcriptional regulator, IclR family.
     
 0.495
SDQ54781.1
Transcriptional regulator, IclR family.
     
 0.495
Your Current Organism:
Arthrobacter crystallopoietes
NCBI taxonomy Id: 37928
Other names: A. crystallopoietes, ATCC 15481, CIP 102717, DSM 20117, IFO 14235, JCM 2522, LMG 3819, LMG:3819, NBRC 14235
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