SDQ28850.1 protein (Arthrobacter crystallopoietes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDQ28850.1

Amino acid ABC transporter membrane protein, PAAT family. (326 aa)

Predicted Functional Partners:

SDQ28831.1

0.998

SDQ91016.1

0.976

SDQ83584.1

0.961

SDQ28869.1

0.960

SDQ28725.1

0.931

SDQ38639.1

0.929

GlnQ-2

0.920

SDQ28526.1

0.919

SDR17727.1

0.919

SDQ90955.1

0.915

Your Current Organism:

Arthrobacter crystallopoietes

NCBI taxonomy Id: 37928
Other names: A. crystallopoietes, ATCC 15481, CIP 102717, DSM 20117, IFO 14235, JCM 2522, LMG 3819, LMG:3819, NBRC 14235

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GlnQ-2	SDQ28850.1	SAMN04489742_2755	SAMN04489742_0465	Cystine transport system ATP-binding protein.	Amino acid ABC transporter membrane protein, PAAT family.	0.920
GlnQ-2	SDQ28869.1	SAMN04489742_2755	SAMN04489742_0466	Cystine transport system ATP-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.797
GlnQ-2	SDQ83584.1	SAMN04489742_2755	SAMN04489742_2757	Cystine transport system ATP-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	0.992
GlnQ-2	SDQ91016.1	SAMN04489742_2755	SAMN04489742_3044	Cystine transport system ATP-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.821
SDQ28526.1	SDQ28725.1	SAMN04489742_0449	SAMN04489742_0459	Polar amino acid transport system ATP-binding protein.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.904
SDQ28526.1	SDQ28850.1	SAMN04489742_0449	SAMN04489742_0465	Polar amino acid transport system ATP-binding protein.	Amino acid ABC transporter membrane protein, PAAT family.	0.919
SDQ28526.1	SDQ28869.1	SAMN04489742_0449	SAMN04489742_0466	Polar amino acid transport system ATP-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.800
SDQ28526.1	SDQ83584.1	SAMN04489742_0449	SAMN04489742_2757	Polar amino acid transport system ATP-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	0.507
SDQ28526.1	SDQ91016.1	SAMN04489742_0449	SAMN04489742_3044	Polar amino acid transport system ATP-binding protein.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.801
SDQ28725.1	SDQ28526.1	SAMN04489742_0459	SAMN04489742_0449	Amino acid ABC transporter ATP-binding protein, PAAT family.	Polar amino acid transport system ATP-binding protein.	0.904
SDQ28725.1	SDQ28850.1	SAMN04489742_0459	SAMN04489742_0465	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.931
SDQ28725.1	SDQ28869.1	SAMN04489742_0459	SAMN04489742_0466	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.818
SDQ28725.1	SDQ83584.1	SAMN04489742_0459	SAMN04489742_2757	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	0.557
SDQ28725.1	SDQ91016.1	SAMN04489742_0459	SAMN04489742_3044	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.818
SDQ28831.1	SDQ28850.1	SAMN04489742_0464	SAMN04489742_0465	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.998
SDQ28831.1	SDQ28869.1	SAMN04489742_0464	SAMN04489742_0466	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.959
SDQ28831.1	SDQ83584.1	SAMN04489742_0464	SAMN04489742_2757	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	0.518
SDQ28831.1	SDQ91016.1	SAMN04489742_0464	SAMN04489742_3044	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.791
SDQ28850.1	GlnQ-2	SAMN04489742_0465	SAMN04489742_2755	Amino acid ABC transporter membrane protein, PAAT family.	Cystine transport system ATP-binding protein.	0.920
SDQ28850.1	SDQ28526.1	SAMN04489742_0465	SAMN04489742_0449	Amino acid ABC transporter membrane protein, PAAT family.	Polar amino acid transport system ATP-binding protein.	0.919