STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ41193.1L-2-hydroxyglutarate oxidase LhgO. (408 aa)    
Predicted Functional Partners:
SDQ41218.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
      0.842
SDQ41093.1
Hypothetical protein.
       0.786
SDQ41142.1
TRAP transporter, 4TM/12TM fusion protein.
       0.783
SDQ41169.1
Cyanate permease.
  
    0.775
SDQ41116.1
Hypothetical protein.
       0.773
SDQ41242.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.773
SDQ41268.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
  
    0.751
SDQ41070.1
4-carboxymuconolactone decarboxylase.
  
    0.654
SDQ41317.1
glutaryl-CoA dehydrogenase.
  
  
 0.654
SDQ41044.1
Glucose 1-dehydrogenase.
       0.645
Your Current Organism:
Arthrobacter crystallopoietes
NCBI taxonomy Id: 37928
Other names: A. crystallopoietes, ATCC 15481, CIP 102717, DSM 20117, IFO 14235, JCM 2522, LMG 3819, LMG:3819, NBRC 14235
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