STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ53385.1Predicted alpha-1,6-mannanase, GH76 family. (383 aa)    
Predicted Functional Partners:
SDR09296.1
Hypothetical protein.
  
     0.733
SDR12524.1
Sporulation and spore germination; Manually curated.
  
     0.669
SDQ25637.1
Protein of unknown function.
  
     0.652
SDR08875.1
Protein of unknown function.
  
   
 0.569
SDQ52550.1
tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase.
 
     0.544
SDQ53353.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.541
SDQ53324.1
glutaryl-CoA dehydrogenase.
       0.502
SDQ53414.1
iron(III) transport system substrate-binding protein.
       0.461
SDQ53437.1
iron(III) transport system permease protein; Manually curated.
       0.458
fbpC
iron(III) transport system ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
       0.458
Your Current Organism:
Arthrobacter crystallopoietes
NCBI taxonomy Id: 37928
Other names: A. crystallopoietes, ATCC 15481, CIP 102717, DSM 20117, IFO 14235, JCM 2522, LMG 3819, LMG:3819, NBRC 14235
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