STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ58288.1Polysaccharide deacetylase. (292 aa)    
Predicted Functional Partners:
SDQ58264.1
L-asparaginase.
     0.896
SDQ45139.1
Asparaginase.
     0.671
SDR29725.1
Hypothetical protein.
  
     0.654
SDQ68678.1
Maleate isomerase.
  
     0.554
SDQ58314.1
Hypothetical protein.
       0.498
SDQ58116.1
Predicted amidohydrolase.
 
    0.466
SDQ31886.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
  
  
 0.464
SDQ55548.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
      0.450
SDQ58187.1
Allantoin racemase.
 
     0.410
Your Current Organism:
Arthrobacter crystallopoietes
NCBI taxonomy Id: 37928
Other names: A. crystallopoietes, ATCC 15481, CIP 102717, DSM 20117, IFO 14235, JCM 2522, LMG 3819, LMG:3819, NBRC 14235
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.