STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ58502.1N-terminal domain of (some) glycogen debranching enzymes. (153 aa)    
Predicted Functional Partners:
SDQ23995.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 0.857
SDQ80332.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.788
SDQ85176.1
Amylo-alpha-1,6-glucosidase.
  
     0.763
SDQ50714.1
Starch phosphorylase.
  
 
 0.674
SDQ64217.1
Phosphoglucomutase.
   
  
 0.528
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 0.524
SDQ96069.1
Maltooligosyl trehalose hydrolase.
  
  
 0.494
SDQ91152.1
Rho termination factor, N-terminal domain.
  
     0.485
SDQ73287.1
PucR C-terminal helix-turn-helix domain-containing protein.
  
     0.463
SDQ79225.1
Hypothetical protein.
  
     0.426
Your Current Organism:
Arthrobacter crystallopoietes
NCBI taxonomy Id: 37928
Other names: A. crystallopoietes, ATCC 15481, CIP 102717, DSM 20117, IFO 14235, JCM 2522, LMG 3819, LMG:3819, NBRC 14235
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