SDQ78830.1 protein (Arthrobacter crystallopoietes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDQ78830.1

Methyltransferase domain-containing protein. (217 aa)

Predicted Functional Partners:

SDQ59053.1

0.912

SDQ84146.1

0.912

SDQ91050.1

0.888

SDQ55389.1

0.886

SDQ78857.1

0.576

SDR19819.1

0.497

SDR29570.1

0.497

SDQ78879.1

0.409

SDQ78904.1

0.409

Your Current Organism:

Arthrobacter crystallopoietes

NCBI taxonomy Id: 37928
Other names: A. crystallopoietes, ATCC 15481, CIP 102717, DSM 20117, IFO 14235, JCM 2522, LMG 3819, LMG:3819, NBRC 14235

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDQ55389.1	SDQ78830.1	SAMN04489742_1569	SAMN04489742_2565	Thioredoxin reductase (NADPH).	Methyltransferase domain-containing protein.	0.886
SDQ59053.1	SDQ78830.1	SAMN04489742_1733	SAMN04489742_2565	Thioredoxin reductase.	Methyltransferase domain-containing protein.	0.912
SDQ78830.1	SDQ55389.1	SAMN04489742_2565	SAMN04489742_1569	Methyltransferase domain-containing protein.	Thioredoxin reductase (NADPH).	0.886
SDQ78830.1	SDQ59053.1	SAMN04489742_2565	SAMN04489742_1733	Methyltransferase domain-containing protein.	Thioredoxin reductase.	0.912
SDQ78830.1	SDQ78857.1	SAMN04489742_2565	SAMN04489742_2566	Methyltransferase domain-containing protein.	Predicted arabinose efflux permease, MFS family.	0.576
SDQ78830.1	SDQ78879.1	SAMN04489742_2565	SAMN04489742_2567	Methyltransferase domain-containing protein.	DNA-binding transcriptional regulator, ArsR family.	0.409
SDQ78830.1	SDQ78904.1	SAMN04489742_2565	SAMN04489742_2568	Methyltransferase domain-containing protein.	Cation diffusion facilitator family transporter.	0.409
SDQ78830.1	SDQ84146.1	SAMN04489742_2565	SAMN04489742_2778	Methyltransferase domain-containing protein.	Thioredoxin reductase.	0.912
SDQ78830.1	SDQ91050.1	SAMN04489742_2565	SAMN04489742_3045	Methyltransferase domain-containing protein.	Isochorismate synthase.	0.888
SDQ78830.1	SDR19819.1	SAMN04489742_2565	SAMN04489742_4534	Methyltransferase domain-containing protein.	Molybdopterin synthase subunit MoaE.	0.497
SDQ78830.1	SDR29570.1	SAMN04489742_2565	SAMN04489742_4713	Methyltransferase domain-containing protein.	Molybdopterin synthase subunit MoaE.	0.497
SDQ78857.1	SDQ78830.1	SAMN04489742_2566	SAMN04489742_2565	Predicted arabinose efflux permease, MFS family.	Methyltransferase domain-containing protein.	0.576
SDQ78857.1	SDQ78879.1	SAMN04489742_2566	SAMN04489742_2567	Predicted arabinose efflux permease, MFS family.	DNA-binding transcriptional regulator, ArsR family.	0.538
SDQ78857.1	SDQ78904.1	SAMN04489742_2566	SAMN04489742_2568	Predicted arabinose efflux permease, MFS family.	Cation diffusion facilitator family transporter.	0.532
SDQ78879.1	SDQ78830.1	SAMN04489742_2567	SAMN04489742_2565	DNA-binding transcriptional regulator, ArsR family.	Methyltransferase domain-containing protein.	0.409
SDQ78879.1	SDQ78857.1	SAMN04489742_2567	SAMN04489742_2566	DNA-binding transcriptional regulator, ArsR family.	Predicted arabinose efflux permease, MFS family.	0.538
SDQ78879.1	SDQ78904.1	SAMN04489742_2567	SAMN04489742_2568	DNA-binding transcriptional regulator, ArsR family.	Cation diffusion facilitator family transporter.	0.879
SDQ78904.1	SDQ78830.1	SAMN04489742_2568	SAMN04489742_2565	Cation diffusion facilitator family transporter.	Methyltransferase domain-containing protein.	0.409
SDQ78904.1	SDQ78857.1	SAMN04489742_2568	SAMN04489742_2566	Cation diffusion facilitator family transporter.	Predicted arabinose efflux permease, MFS family.	0.532
SDQ78904.1	SDQ78879.1	SAMN04489742_2568	SAMN04489742_2567	Cation diffusion facilitator family transporter.	DNA-binding transcriptional regulator, ArsR family.	0.879