STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM53691.1ABC-2 type transport system permease protein. (373 aa)    
Predicted Functional Partners:
SFM53638.1
HlyD family secretion protein.
 
  
 0.955
SFM53665.1
Ribosome-dependent ATPase.
 
 
0.901
SFM47564.1
HlyD family secretion protein.
 
  
 0.812
SFM53720.1
Apolipoprotein D and lipocalin family protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
       0.757
SFM47543.1
Ribosome-dependent ATPase.
 
 
0.582
SFM53610.1
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
       0.531
SFM50599.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
  
 0.441
SFM43566.1
Nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
    0.421
SFN06640.1
Nitroreductase.
  
    0.421
SFM98777.1
Cu-processing system ATP-binding protein.
 
 
 0.414
Your Current Organism:
Marinobacter pelagius
NCBI taxonomy Id: 379482
Other names: CGMCC 1.6775, JCM 14804, M. pelagius, Marinobacter pelagius Xu et al. 2008, Marinobacter sp. HS225, strain HS225
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.