Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFM48148.1 | SFM57442.1 | SAMN04487961_0418 | SAMN04487961_0750 | Protein TonB. | Biopolymer transport protein ExbD. | 0.832 |
SFM48148.1 | SFM74220.1 | SAMN04487961_0418 | SAMN04487961_1088 | Protein TonB. | Biopolymer transport protein ExbD. | 0.938 |
SFM48148.1 | SFM74248.1 | SAMN04487961_0418 | SAMN04487961_1089 | Protein TonB. | Biopolymer transport protein ExbB. | 0.916 |
SFM48148.1 | tolR | SAMN04487961_0418 | SAMN04487961_1055 | Protein TonB. | Cell division and transport-associated protein TolR (TC 2.C.1.2.1); Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.849 |
SFM57392.1 | SFM57442.1 | SAMN04487961_0748 | SAMN04487961_0750 | Outer membrane transport energization protein TonB (TC 2.C.1.1.1). | Biopolymer transport protein ExbD. | 0.968 |
SFM57392.1 | SFM74220.1 | SAMN04487961_0748 | SAMN04487961_1088 | Outer membrane transport energization protein TonB (TC 2.C.1.1.1). | Biopolymer transport protein ExbD. | 0.971 |
SFM57392.1 | SFM74248.1 | SAMN04487961_0748 | SAMN04487961_1089 | Outer membrane transport energization protein TonB (TC 2.C.1.1.1). | Biopolymer transport protein ExbB. | 0.756 |
SFM57392.1 | tolR | SAMN04487961_0748 | SAMN04487961_1055 | Outer membrane transport energization protein TonB (TC 2.C.1.1.1). | Cell division and transport-associated protein TolR (TC 2.C.1.2.1); Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.966 |
SFM57442.1 | SFM48148.1 | SAMN04487961_0750 | SAMN04487961_0418 | Biopolymer transport protein ExbD. | Protein TonB. | 0.832 |
SFM57442.1 | SFM57392.1 | SAMN04487961_0750 | SAMN04487961_0748 | Biopolymer transport protein ExbD. | Outer membrane transport energization protein TonB (TC 2.C.1.1.1). | 0.968 |
SFM57442.1 | SFM74248.1 | SAMN04487961_0750 | SAMN04487961_1089 | Biopolymer transport protein ExbD. | Biopolymer transport protein ExbB. | 0.791 |
SFM74126.1 | SFM74220.1 | SAMN04487961_1085 | SAMN04487961_1088 | Hypothetical protein; Belongs to the UPF0434 family. | Biopolymer transport protein ExbD. | 0.784 |
SFM74126.1 | SFM74248.1 | SAMN04487961_1085 | SAMN04487961_1089 | Hypothetical protein; Belongs to the UPF0434 family. | Biopolymer transport protein ExbB. | 0.778 |
SFM74126.1 | kdsB | SAMN04487961_1085 | SAMN04487961_1084 | Hypothetical protein; Belongs to the UPF0434 family. | 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase); Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.809 |
SFM74126.1 | lpxK | SAMN04487961_1085 | SAMN04487961_1086 | Hypothetical protein; Belongs to the UPF0434 family. | lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.823 |
SFM74126.1 | msbA | SAMN04487961_1085 | SAMN04487961_1087 | Hypothetical protein; Belongs to the UPF0434 family. | ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.799 |
SFM74126.1 | murB | SAMN04487961_1085 | SAMN04487961_1082 | Hypothetical protein; Belongs to the UPF0434 family. | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | 0.734 |
SFM74220.1 | SFM48148.1 | SAMN04487961_1088 | SAMN04487961_0418 | Biopolymer transport protein ExbD. | Protein TonB. | 0.938 |
SFM74220.1 | SFM57392.1 | SAMN04487961_1088 | SAMN04487961_0748 | Biopolymer transport protein ExbD. | Outer membrane transport energization protein TonB (TC 2.C.1.1.1). | 0.971 |
SFM74220.1 | SFM74126.1 | SAMN04487961_1088 | SAMN04487961_1085 | Biopolymer transport protein ExbD. | Hypothetical protein; Belongs to the UPF0434 family. | 0.784 |
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