Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFM96465.1 | SFM96492.1 | SAMN04487961_1734 | SAMN04487961_1735 | Hypothetical protein. | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD. | 0.559 |
SFM96465.1 | SFM96529.1 | SAMN04487961_1734 | SAMN04487961_1736 | Hypothetical protein. | Protein of unknown function. | 0.401 |
SFM96492.1 | SFM96465.1 | SAMN04487961_1735 | SAMN04487961_1734 | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD. | Hypothetical protein. | 0.559 |
SFM96492.1 | SFM96529.1 | SAMN04487961_1735 | SAMN04487961_1736 | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD. | Protein of unknown function. | 0.536 |
SFM96492.1 | rpsB | SAMN04487961_1735 | SAMN04487961_2616 | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD. | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.677 |
SFM96492.1 | rpsC | SAMN04487961_1735 | SAMN04487961_3001 | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.640 |
SFM96492.1 | rpsJ | SAMN04487961_1735 | SAMN04487961_2994 | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.454 |
SFM96529.1 | SFM96465.1 | SAMN04487961_1736 | SAMN04487961_1734 | Protein of unknown function. | Hypothetical protein. | 0.401 |
SFM96529.1 | SFM96492.1 | SAMN04487961_1736 | SAMN04487961_1735 | Protein of unknown function. | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD. | 0.536 |
rpsB | SFM96492.1 | SAMN04487961_2616 | SAMN04487961_1735 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD. | 0.677 |
rpsB | rpsC | SAMN04487961_2616 | SAMN04487961_3001 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rpsB | rpsJ | SAMN04487961_2616 | SAMN04487961_2994 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rpsC | SFM96492.1 | SAMN04487961_3001 | SAMN04487961_1735 | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD. | 0.640 |
rpsC | rpsB | SAMN04487961_3001 | SAMN04487961_2616 | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rpsC | rpsJ | SAMN04487961_3001 | SAMN04487961_2994 | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rpsJ | SFM96492.1 | SAMN04487961_2994 | SAMN04487961_1735 | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | FKBP-type peptidyl-prolyl cis-trans isomerase SlyD. | 0.454 |
rpsJ | rpsB | SAMN04487961_2994 | SAMN04487961_2616 | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rpsJ | rpsC | SAMN04487961_2994 | SAMN04487961_3001 | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |